---
title: "CUT&RUN Quality Control & Success Metrics | QC Guide"
slug: "summary-of-cut-and-run-quality-control-and-success-metrics"
description: "Learn the key quality control metrics for CUT&RUN, including DNA yield, library quality, sequencing performance, and data analysis."
updated: 2024-10-02T15:49:27Z
published: 2024-10-02T15:49:27Z
canonical: "support.epicypher.com/summary-of-cut-and-run-quality-control-and-success-metrics"
---

> ## Documentation Index
> Fetch the complete documentation index at: https://support.epicypher.com/llms.txt
> Use this file to discover all available pages before exploring further.

# Summary of CUT&RUN quality control and success metrics

The CUTANA™ CUT&RUN Kit contains multiple quality control metrics and checks to ensure successful chromatin profiling. Quality control metrics are listed for each section of the CUT&RUN workflow (see **Figure 1**). For more, navigate to the following articles:

- [Confirm high-quality sample prep](/v1/docs/confirm-high-quality-sample-prep-cut-and-run) (also see [this article](/v1/docs/cell-sample-good-enough-cut-and-run))
- [Assess CUT&RUN-enriched DNA yields](/v1/docs/cut-and-run-yields)
- [Confirm quality of sequencing library](/v1/docs/confirm-quality-of-sequencing-library)
- [Expected sequencing metrics](/v1/docs/cut-and-run-sequencing-metrics)
- Using SNAP-CUTANA Spike-in Controls and control antibodies to [determine assay success](/v1/docs/using-snap-cutana-spike-in-controls-to-determine-assay-success) and [troubleshoot workflows](/v1/docs/using-snap-cutana-spike-ins-to-troubleshoot-workflows)

![updated QC checks@2x(1)](https://cdn.document360.io/1fc69f91-cf1e-45ab-bc51-4063eb80e37c/Images/Documentation/updated%20QC%20checks@2x(1).png)

**Figure 1.** Overview of CUTANA CUT&RUN success metrics.